Students at work for GiMaRIS... 2008-2009 sind
Most of the fundamental research at GiMaRIS is done by students and in cooperation with Reseach organisations, Universities, NGOs and other Small Medium Enterprices. Within GiMaRIS the students are supervised by dr. Arjan Gittenberger.


 




Name: Joe Freijser
Organisation:
Van Hall Larenstein University of Applied Sciences, Wageningen University and Research Centre Study: Coastal Zone Management Responsible supervisor: Peter Hofman and Theo de Wit Theo de Wit
Associated organisation: MatureDevelopment Responsible supervisor: Paul van der Heijden, MBA
Project:Substantial ecological and economical damage has been caused by the introduction of exotic marine species and their diseases, parasites, and predators. In recent years they have had an increased impact worldwide, at least partly due to global warming and intensified boat traffic. They can e.g. threaten public health, be a great nuisance for tourists, and cause substantial economical damage to marine systems and related industry. European legislation urges the responsible governments to take measures. Policy makers ask for innovative prevention, monitoring and control policies and instruments. The companies MatureDevelopment & GIMARIS are active in a value network, creating effective solutions. In the present study Joe has focused on studying the amount of economical damage that is done by exotic fouling species by covering floating docks, buoys, piers, and other human made structures in marine harbours throughout the Netherlands.



Name:
Marius van den Eshof
Organisation:
Helicon Velp Study: Forestry and Nature Management Responsible supervisor: Mark Meijering
Project: Marius helps out in the field and in the lab in various ways from data analyses to research material construction. Substantial ecological and economical damage has been caused by the introduction of exotic marine species and their diseases, parasites, and predators. In recent years they have had an increased impact worldwide, at least partly due to global warming and intensified boat traffic. They can e.g. threaten public health, be a great nuisance for tourists, and cause substantial economical damage to marine systems and related industry. Jan is doing a literature study for GiMaRIS focussing on the amount of economical damage that is done by marine exotic species in Europe.
Christiaan


Name:
Christiaan van Assendelft
Organisation:
HZ University of Applied Sciences Study: Aquatic Ecotechnology Responsible supervisor: Carla Pesch
Associated organisation: MatureDevelopment Responsible supervisor: Paul van der Heijden, MBA
Project: Research on the individual and combined effects of copper and silver to Escherichia coli in water: Silver has been used as an anti-bacterial agent for ages. Vikings commonly used it for disinfecting their drinking water. We hope to prove that copper has a positive and maybe even a synergetic effect on the anti-microbial properties of silver.



Name:
Bastiaan van Benthem
Organisation:
Helicon Velp Study: Forestry and Nature Management Responsible supervisor: Mark Meijering
Project: Bastiaan helps out in the field and in the lab in various ways from data analyses to research material construction. Substantial ecological and economical damage has been caused by the introduction of exotic marine species and their diseases, parasites, and predators. In recent years they have had an increased impact worldwide, at least partly due to global warming and intensified boat traffic. They can e.g. threaten public health, be a great nuisance for tourists, and cause substantial economical damage to marine systems and related industry. Jan is doing a literature study for GiMaRIS focussing on the amount of economical damage that is done by marine exotic species in Europe.
Jan


Name:
Jan Olijerhoek
Organisation:
Institute of Biology, Leiden University Study: Biology Responsible supervisor: Prof. dr. Edi Gittenberger
Project: Literature study: "Ecological and economical damage of marine invasive species in Europe'. Substantial ecological and economical damage has been caused by the introduction of exotic marine species and their diseases, parasites, and predators. In recent years they have had an increased impact worldwide, at least partly due to global warming and intensified boat traffic. They can e.g. threaten public health, be a great nuisance for tourists, and cause substantial economical damage to marine systems and related industry.




Name: Jonathan den Boer, Miranda ter Laak and Bas Pigmans
Organisation:
Leiden University of Applied Sciences Study: BioInformatics Responsible supervisor: Hans van Bostelen
Project:We are Jonathan den Boer, Miranda ter Laak and Bas Pigmans. In the second year of our study bio-informatics we did a small internship for GiMaRIS. This project was about the hypothesis that removing intra-specific variation in a given dataset could probably provide a better phylogenetic tree, in contrast to not removing intra-specific variation. A program was written to automatically remove this variation.
Ron van der Stelt


Name:
Ron van der Stelt
Organisation:
Institute of Biology, Leiden University Study: Biology Responsible supervisor: Prof. dr. Edi Gittenberger
Project: Floating artificial structures (or FAS), like pontoons and buoys, form a relatively new and unnatural habitat. FAS have a unique combination of characteristics that makes it hard to predict which species will occur on it. In this study I will try to find out what species or groups of species have their living on FAS, using the SETL-plates as well as floating docks. So, a description of FAS, both abiotic and biotic, will be made. Eventually, it is interesting to see how FAS represent the Dutch marine fauna.
Lotte Mens


Name:
Lotte Mens
Organisation:
Institute of Biology, Leiden University  Study: Biology Responsible supervisor: Prof. dr. Edi Gittenberger
Project: In the SETL project we are studying which marine organisms settle on plastic plates. These plates are hung in the water fixed to floating docks. Every three months the species that have settled on the plates are identified. I will make computer folders with pictures of all the species that were found on the plates until now, ordered by phylum, order, class, family and species. In addition I will also make a poster with pictures of the species and a project report with species descriptions. This all will make it easier for people to identify the species on these plates in the future.
Shelly Persaud


Name:
Shelly Persaud
Organisation:
TOPlab, Leiden University of Applied Sciences Study: Biology en Medical laboratory-research (B&M) Responsible supervisors: Jessica Kamphorst & Dr. Willem van Leeuwen
Project: In recent years marine invasive species, i.e. species that are introduced in an area outside of their native distribution, have had an increased impact worldwide. This is at least partly due to global warming and partly due to intensified boat traffic. They can e.g. threaten public health, be a great nuisance for tourists, and cause substantial economical damage to marine systems and related industry. The rapid detection of a new species being tranported into Dutch waters in e.g. the ballastwater of boats coming from the American coast, can be of great help to reduce the chance of these species settling and becoming harmfull to our ecosystem and economy. For the rapid detection of marine invasive species, rapid species identification techniques are of the uttermost importance. Identifying organisms in their early life stages, e.g. in their larval stages in the ballastwater of a boat, on the basis of morphology can be a difficult to impossible task. DNA-barcoding as an identification technique is therefore becoming more and more popular. By sequencing the DNA of an organism and by comparing the resulting sequence with the known DNA-barcodes of a range of species, one can easily identify any organism. A disadvantage of the method is that one can only identify species of which the DNA has already been sequenced in the past. For that purpose GiMaRIS has joined forces with the TOPlab of the Leiden University of Applied Sciences. Marine species, both natives and non-natives, are identified on the basis on their morphology in the GiMaRIS lab after which they are sequenced in the TOPlab, with the well appreciated help of students like Shelly.r



Name:
Frederike Lindeyer
Organisation:
Institute of Biology, Leiden University Study: Biology Responsible supervisor: Prof. dr. Edi Gittenberger
Project: The SETL-project determines marine biodiversity by identifying species which settle on pvc-plates. This is done for every season. However, marine communities on these plates could be very different depending on when plates are submersed and on the length of submersion. Succession may play an important role in species assemblage in which early colonizers have an influence (stimulation or inhibition) on later colonizers. My research will focus on the question whether succession occurs among marine fouling communities and whether the time of submersion of the SETL-plates determines the eventual (climax) community.


 

Name: Jonathan den Boer
Organisation:
Leiden University of Applied Sciences Study: BioInformatics Responsible supervisor: Hans van Bostelen
Project: Data acquired with the SETL-project, i.e. 160 fouling plates which are analysed and replaced every three months over the last three years, is stored in a database. Questions like: “Do species have a preference for the location on the pvc-plate they settle on?”, or “Do species attract or reject other species?” could easily be answered with data from this database. Analyses like these would require a lot of time and patience, if done manually though. That is why I am going to make a computer program in which one can select the location(s), species, and the type of analysis one wants to do on the selected data. The program will then give the results, leaving you with exactly what you need to make your conclusions.


 

Name: Simeon Moons
Organisation:
Institute of Biology, Leiden University Study: Biology Responsible supervisor: Prof. dr. Edi Gittenberger
Project: Invasive alien species pose a growing thread to nature and society. It is said that only some alien species possess trades that allow them to become invasive. They can spread very fast, can adapt to a large variety of environments and are serious competition to native species. To study these trades I have focused on the settlement behavior of the sea-squirts Botryllus schlosseri and Botrylloides violaceus. These are two similar species, which are very successful invaders in America. In Dutch waters however B. schlosseri is native whereas B. violaceus is an alien species. Questioning whether species show their invasive trades only in their non-native area, we are comparing the behavior of these two species along the Atlantic coasts of NW Europe and NE America.